Genetic determinants of long-term changes in blood lipid concentrations: 10-year follow-up of the GLACIER study
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Genetic determinants of long-term changes in blood lipid concentrations : 10-year follow-up of the GLACIER study. / Varga, Tibor V; Sonestedt, Emily; Shungin, Dmitry; Koivula, Robert W; Hallmans, Göran; Escher, Stefan A; Barroso, Inês; Nilsson, Peter; Melander, Olle; Orho-Melander, Marju; Renström, Frida; Franks, Paul W.
In: PLOS Genetics, Vol. 10, No. 6, e1004388, 06.2014.Research output: Contribution to journal › Journal article › Research › peer-review
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TY - JOUR
T1 - Genetic determinants of long-term changes in blood lipid concentrations
T2 - 10-year follow-up of the GLACIER study
AU - Varga, Tibor V
AU - Sonestedt, Emily
AU - Shungin, Dmitry
AU - Koivula, Robert W
AU - Hallmans, Göran
AU - Escher, Stefan A
AU - Barroso, Inês
AU - Nilsson, Peter
AU - Melander, Olle
AU - Orho-Melander, Marju
AU - Renström, Frida
AU - Franks, Paul W
PY - 2014/6
Y1 - 2014/6
N2 - Recent genome-wide meta-analyses identified 157 loci associated with cross-sectional lipid traits. Here we tested whether these loci associate (singly and in trait-specific genetic risk scores [GRS]) with longitudinal changes in total cholesterol (TC) and triglyceride (TG) levels in a population-based prospective cohort from Northern Sweden (the GLACIER Study). We sought replication in a southern Swedish cohort (the MDC Study; N = 2,943). GLACIER Study participants (N = 6,064) were genotyped with the MetaboChip array. Up to 3,495 participants had 10-yr follow-up data available in the GLACIER Study. The TC- and TG-specific GRSs were strongly associated with change in lipid levels (β = 0.02 mmol/l per effect allele per decade follow-up, P = 2.0 × 10(-11) for TC; β = 0.02 mmol/l per effect allele per decade follow-up, P = 5.0 × 10(-5) for TG). In individual SNP analysis, one TC locus, apolipoprotein E (APOE) rs4420638 (β = 0.12 mmol/l per effect allele per decade follow-up, P = 2.0 × 10(-5)), and two TG loci, tribbles pseudokinase 1 (TRIB1) rs2954029 (β = 0.09 mmol/l per effect allele per decade follow-up, P = 5.1 × 10(-4)) and apolipoprotein A-I (APOA1) rs6589564 (β = 0.31 mmol/l per effect allele per decade follow-up, P = 1.4 × 10(-8)), remained significantly associated with longitudinal changes for the respective traits after correction for multiple testing. An additional 12 loci were nominally associated with TC or TG changes. In replication analyses, the APOE rs4420638, TRIB1 rs2954029, and APOA1 rs6589564 associations were confirmed (P ≤ 0.001). In summary, trait-specific GRSs are robustly associated with 10-yr changes in lipid levels and three individual SNPs were strongly associated with 10-yr changes in lipid levels.
AB - Recent genome-wide meta-analyses identified 157 loci associated with cross-sectional lipid traits. Here we tested whether these loci associate (singly and in trait-specific genetic risk scores [GRS]) with longitudinal changes in total cholesterol (TC) and triglyceride (TG) levels in a population-based prospective cohort from Northern Sweden (the GLACIER Study). We sought replication in a southern Swedish cohort (the MDC Study; N = 2,943). GLACIER Study participants (N = 6,064) were genotyped with the MetaboChip array. Up to 3,495 participants had 10-yr follow-up data available in the GLACIER Study. The TC- and TG-specific GRSs were strongly associated with change in lipid levels (β = 0.02 mmol/l per effect allele per decade follow-up, P = 2.0 × 10(-11) for TC; β = 0.02 mmol/l per effect allele per decade follow-up, P = 5.0 × 10(-5) for TG). In individual SNP analysis, one TC locus, apolipoprotein E (APOE) rs4420638 (β = 0.12 mmol/l per effect allele per decade follow-up, P = 2.0 × 10(-5)), and two TG loci, tribbles pseudokinase 1 (TRIB1) rs2954029 (β = 0.09 mmol/l per effect allele per decade follow-up, P = 5.1 × 10(-4)) and apolipoprotein A-I (APOA1) rs6589564 (β = 0.31 mmol/l per effect allele per decade follow-up, P = 1.4 × 10(-8)), remained significantly associated with longitudinal changes for the respective traits after correction for multiple testing. An additional 12 loci were nominally associated with TC or TG changes. In replication analyses, the APOE rs4420638, TRIB1 rs2954029, and APOA1 rs6589564 associations were confirmed (P ≤ 0.001). In summary, trait-specific GRSs are robustly associated with 10-yr changes in lipid levels and three individual SNPs were strongly associated with 10-yr changes in lipid levels.
KW - Aged
KW - Apolipoprotein A-I/genetics
KW - Apolipoproteins E/genetics
KW - Cholesterol/blood
KW - Cohort Studies
KW - Cross-Sectional Studies
KW - Female
KW - Genome-Wide Association Study
KW - Genotype
KW - Humans
KW - Intracellular Signaling Peptides and Proteins/genetics
KW - Life Style
KW - Longitudinal Studies
KW - Male
KW - Middle Aged
KW - Polymorphism, Single Nucleotide
KW - Prospective Studies
KW - Protein-Serine-Threonine Kinases/antagonists & inhibitors
KW - Surveys and Questionnaires
KW - Sweden
KW - Triglycerides/blood
U2 - 10.1371/journal.pgen.1004388
DO - 10.1371/journal.pgen.1004388
M3 - Journal article
C2 - 24922540
VL - 10
JO - P L o S Genetics
JF - P L o S Genetics
SN - 1553-7390
IS - 6
M1 - e1004388
ER -
ID: 242838485